Books set in Kyoto start with the classics…

Murasaki ShikibuThe Tale of Genji (Genji Monogatari) (c.1000-21)
Sei ShonagonThe Pillow Book (Makura no Sōshi) (1002)
Kamo no Chomei An Account of a Ten Foot Square Hut (Hojoki) (1212)
anonŌkagami (the Great Mirror) date unknown
anon – The Tales of the Heike (Heike Monogatari) mid-13th century
Yoshida KenkoEssays in Idleness (Tsurezuregusa) (c.1330-1332)

Also many collections of poetry have originated in Kyoto, three of the most celebrated being:

ed. Ki no Tsurayuki et al Kokinshu (Collection of Old and New) c. 905
anon  Tales of Ise (Ise Monogatari) 10c
ed. Fujiwara TeikaOgura Hyakunin Isshu (One Hundred Poems by One Hundred Poets) (early 13c)

Isabella Bird visited in 1878 and met with Doshisha founder, Niijima Jo amongst others. (Her account is in the original two-volume edition of 1880, not however in the later one-volume paperback.)

Lafcadio Hearn wrote an account of his visit to Kyoto at the time of the 1100th celebration, and seven of his short stories are set in the city.

Amongst modern Japanese classics the following in particular stand out:

Akutagawa Ryunosuke – ‘Rashomon’ (1915)
Ogai Mori – ‘Boat on the River Takase’ (‘Takasebune’) (1916)
Mishima YukioThe Temple of the Golden Pavilion (Kinkakuji) (1956)
Enchi FumikoMasks (Onna men) (1958)
Kawabata YasunariThe Old Capital (Koto) (1962); House of the Sleeping Beauties (Nemureru Bijou) (1961)
Tanizaki JunichiroThe Key (Kagi) (1956); also ‘The Bridge of Dreams’ (in Seven Japanese Tales, 1963)
Kajii Motojiro, – ‘Lemon’, 1924 [see here]

Foreign authors of note include the following:

John Haylock One Hot Summer in Kyoto (1980)
Pico IyerThe Lady and the Monk: Four Seasons in Kyoto (1991); Autumn Light (2019) also touches on Kyoto, though its focus is Nara
Deborah Bollinger BoehmA Zen Romance (1996)
Arthur GoldenMemoirs of a Geisha (1997)
Liza Dalby – The Tale of Murasaki (2000)
David Zoppetti Ichigensan: The Newcomer (2011)
Hans Brinckmann ‘The Tomb in the Kyoto Hills’ (2011)

Foreign poets who have treated the city in their poetry include:

Gary Snyder  – The Back Country, 1968
Cid Corman – various
Harold StewartBy the Old Walls of Kyoto, 1981
Edith Shiffert – various, including Kyoto: The Forest within the Gate,  2014
Margaret ChulaGrinding My Ink, 1994
Robert BradyFurther on this Floating Bridge of Dreams, 1990
Philip WhalenScenes of Life at the Capital, 1970
Robert MacleanWaking to Snow, 2021; Wintermoon, 2022

Walks in Kyoto:

Judith Clancy Exploring Kyoto: On Foot in the Ancient Capital (2008); new ed. Tuttle, 2018
John H. and Phyllis G. Martin Kyoto: 29 Walks in Japan’s Ancient Capital (2014)
Michael Lambe and Ted Taylor ed. Deep Kyoto: Walks (2014)

Kyoto Gardens:

Marc Treib and Ron Herman A Guide to the Gardens of Kyoto (2003)
Thomas Daniell and Akihiko Seki Houses and Gardens of Kyoto (2010)
Judith Clancy and Ben Simmons Kyoto Gardens: Masterworks of the Japanese Gardener’s Art (2015)
Marc Keane et alhttp://kyotogardens.org/
John Dougill and John Einarsen  Zen Gardens and Temples of Kyoto (2017)
Allen S. Weiss Zen Landscapes : Perspectives on Japanese Gardems and Ceramics (2013)

Histories: 

John Dougill  Kyoto: A Cultural History (2006)
Richard Ponsonby-Fane  Kyoto: The Old Capital of Japan, 794-1869 (1956)
Matthew Stavros  Kyoto: An Urban History of Japan’s Premodern Capital (2014)
Herbert E. Plutschow Historical Kyoto (1983)
Fosco MarainiKyoto in the Fifties (1995)

Guidebooks to the city:

Gouverneur Mosher Kyoto: A Contemplative Guide (1964)
Diane Durston  Old Kyoto: A Guide to Traditional Shops, Restaurants and Inns (1986; updated)
Diane Durston Kyoto: Seven Paths to the Heart of the City (1987; 2014)
John H. and Phyllis G. Martin Kyoto: A Cultural Guide to Japan’s Ancient Imperial City (1994)
Christopher Rowthorn Lonely Planet Kyoto (2015)
Judith Clancy Kyoto City of Zen (2012)
John Dougill and Patrick Hochner 100 Kyoto Sights (2020)
Judith Clancy Kyoto Machiya Restaurant Guide (2012)

Other notable works:

Alex KerrAnother Kyoto (2016)
Ivan MorrisThe World of the Shining Prince (1964)
Iwasaki Mineko Geisha of Gion (2002)
Isabel StirlingZen Pioneer: The Life and Works of Ruth Fuller Sasaki (2007)
Matthew Stavros Hojoki (2020) subtitled The Hermit’s Hut as Metaphor
Arthur Golden – Memoirs of a Geisha, 1997

Kyoto sections in larger works

* Fosco Maraini Meeting with Japan (1959)  150 pages, 4 chapters, devoted to Kyoto by a keen observer.
* Isabella Bird  Unbeaten Tracks in Japan (1880) Kyoto chapters are omitted from the modern abridged version. See p.224 of this link.
* George Sansom A History of Japan to 1334 (1958) Large portion is about Kyoto, by a historian who’s a joy to read.
* Nicolas Bouvier The Japan Chronicles tr. Anne Dickerson (1975, tr. 1992)
(see article on Kyoto section by Robert Weis)
* Alex Kerr ‘Three Old Men of Kyoto‘ (Hal Stewart, David Kidd, William Gilbey) in Echoes: Writers in Kyoto Anthology 2017


Literary Kyoto

Kyoto: A Literary Guide (2020) ed. J. Dougill, P. Carty, J. Cronin, I. Higashinaka, M. Lambe and D. McCullough, Camphor Press, 2020

Cycle Kyoto has a four-hour tour of the city to visit places with a literary association. These concern the following authors: Murasaki Shikibu, Sei Shonagon, Matsuo Basho, Tanizaki Junichiro, Kawabata Yasunari, Mishima Yukio, and the Beat poet Gary Snyder.  For details, please click here.

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For those who read Japanese, this is a very comprehensive list of everything set in Kyoto. https://ja.wikipedia.org/…/%E4%BA%AC%E9%83%BD%E5%BA%9C…
京都府を舞台とした作品一覧 - Wikipedia
JA.WIKIPEDIA.ORG
京都府を舞台とした作品一覧 – Wikipedia

Other listings

For an overview of the many crime novels set in the city, see this article.

For an exhaustive list of historical novels and mysteries set in Japan in general, scroll down to the Kyoto section at this link.

There’s an eccentric list of books set in Kyoto which looks like it might have been selected by computer here.  Similarly Goodreads has a rather odd listing here.

Film and anime

Wikipedia has a list of films set in Kyoto.

For a listing of recent anime set in Kyoto, see this link. For a description of the top 15 anime set in Kyoto, see this link. For a location map of anime in Japan with a huge cluster set in Kyoto, click on this.